Boutique hotel vacation rentals in Shinjuku

Find and book unique boutique hotel rentals on Airbnb

Top-rated boutique hotel rentals in Shinjuku

Guests agree: these boutique hotel rentals are highly rated for location, cleanliness, and more.

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Superhost

Hotel room in Ueno

4.88 out of 5 average rating, 705 reviews

The Hideout Tokyo -(Double Room)-

We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government

Superhost

The room features a modern design with a lofted sleeping area containing two single beds and an additional set of single beds below. A small kitchenette and a wooden staircase are visible, along with large windows providing natural light.

Hotel room in 墨田区石原

4.83 out of 5 average rating, 740 reviews

4 single beds in Tokyo/2 train stations: Studio B

A quiet, modern & unique structured room with 4single beds & a private bathroom. 2train stations in 10min. walk, easy access to Shinjuku, Shibuya, Akihabara, Asakusa, Tokyo Dome and Disney Resort! Not 24H open reception, MUST arrive by 11PM. After 11PM check in is not available. ＊No early check in (from 3PM) ＊No late check in (by 11PM) ＊No late check out (by 10AM) ＊No discount. ＊Max : 4people. ＊Cleaning will be done once in 5nights. Visit our Studio A room : https://www.airbnb.jp/rooms/40459587

Guest favorite

The room features two spacious twin beds dressed in neutral tones, with soft linens and pillows. Natural light enters through horizontal blinds on a window. A sleek wooden door leads to a private bathroom, while light wood flooring complements the modern design.

Hotel room in Kagurazaka

4.91 out of 5 average rating, 104 reviews

Standard Room｜Accessible｜20mShinjuku｜Kagurazaka

Barrier-free room ideal for families or small groups. The ground-floor 30 m² twin sleeps up to 4 with two Simmons double beds. In-room: free Wi-Fi, A/C, mini-fridge, air-purifier, safe, TV and hair-dryer. Bathroom stocked with shampoo, conditioner, body & hand soap, towels, gowns, slippers, toothbrush set, cotton kit, razor, sponge and brush. No on-site parking or washer—please use nearby coin lots and laundromats. Fee-based rentals (limited): hair iron, board games, projector, Fire TV Stick.

Top guest favorite

A cozy room features a spacious bed with fresh linens, accompanied by a ceiling fan and soft lighting. An open shelving unit displays decorative items, while a bar fridge and microwave are present for convenience. Warm wood flooring adds to the welcoming ambiance.

Hotel room in Toshima City

4.97 out of 5 average rating, 238 reviews

④2020年新築貸切/クイーンベッド/モダンバスルーム/Rain showerサンシャインシティ３分

Newly built with travelers in mind. The rooms are spacious with Queen size beds (practically unheard-of in Japan). Smart TV, Wi-Fi, tea and coffee. The bathrooms are fashionable, with large walk in rain showers. LED mirrors to get you ready for whatever lighting you will encounter. Rooms have a bar fridge, microwave and kettle for you to store and prepare ready-made meals and drinks. All rooms come equipped with Air-conditioning, ceiling fans and black-out curtains. Ample storage space also!

Superhost

A modern room features distinctive purple lighting along the ceiling, paired with soft white walls. A spacious bed is positioned at the back, while a sleek television and mini-fridge are located near a striped couch and a marble accented coffee table.

Hotel room in Kabukicho

4.82 out of 5 average rating, 39 reviews

Free late check out ② 10 minutes from Shinjuku

"HOTEL G7" Located in the heart of Kabukicho, the world's biggest entertainment district. 20 minutes walk from Shinjuku Station East Exit. A quick taxi ride. 15 minutes from Higashi-Shinjuku Station to Roppongi. A love hotel = motel, but with a different design. There are no hotels in this location at this price. このエリアはラブホテルエリアですが近年はairbnbで貸し出す事多いです。 Rooms will be assigned randomly. Your room may differ from the one pictured Private toilet and bathroom available All rooms are non-smoking

Guest favorite

The hotel entrance is marked by large glass doors framed by a blend of beige and green tiled walls. A small garden is visible beside the entrance, with neatly arranged pavers leading to the main door.

Hotel room in Asakusa

4.82 out of 5 average rating, 914 reviews

全新開幕！2房1廳+吧台廚房！4-5人家庭房！浅草寺景觀！直通羽田＆成田機場！

the Moto Hotel Asakusa is a new hotel opened in June 2021. The nearest station is Ginza sen-Asakusa station 7-8mins by walking. JR Ueno station is walking by 30 mins or 3 steps by Ginza Line(from Asakusa station to Ueno station)is 6 mins. Askusa is famous for the Sensō-ji and it's only 1min from us. The development of Asakusa as an entertainment district during the Edo period so there's many delicious & traditional food & store surround us. The Kappabashi Dougu street is 7mins by foot too.

Superhost

A spacious living area features a dark leather sectional sofa surrounding a multi-functional table. Light-colored walls and wood flooring enhance the welcoming feel. The room includes a ceiling fan and a staircase leading to the upper level, with a collection of plush toys adding a touch of warmth.

Hotel room in Nishinitsupori

4.89 out of 5 average rating, 201 reviews

Nippori train 2min 6Bed 3WC 2Bath Ueno Akihabara

「MoRi House IN 西日暮里」は 2019年新築の三階建一棟ビル3LDK97㎡寝室3室・トイレ3室・シャワー１室・バスタブ1室・キッチン1室 # 3寝室 -寝室A（ 1階、シングルベッド２床個室） -寝室B （ 3階、ダブルベッド2床備えた個室） -寝室C (3階、ダブルベット2床備えた個室) 家族、親友同士で自宅感覚で寛げる快適空間を提供致します。普通のホテルと違い、システム対面キッチンが備え付けており、就寝は一階と三階別々の部屋で、皆んなの集まりは二階のリビングで、キッチン設備を使ってお好きの料理も作って楽しめる事が可能です。旅先でも自宅にいるような「家族団欒」気分を楽しむ事が出来ます。当施設までのアクセスはとても便利です。成田空港から新三河島駅までは京成線一本で着きます。新三河島駅からは歩いて3分の距離に位置しています。その他最寄り駅までの徒歩所要時間 JP「西日暮里駅」10分、東京メトロ千代田「西日暮里駅」8分　　バス停留所も近くにあります。届出・登録番号旅館業法の許可番号 | 東京都保健所 | 30荒保環き（三）第25号

Guest favorite

A simple bedroom features a spacious bed with light bedding and neatly arranged towels. A small table is positioned beside the bed, and a compact sink is located against the wall. Natural light enters through the window, which is covered with sheer curtains.

Hotel room in Takatsu Ward

4.87 out of 5 average rating, 76 reviews

A perfect condominium for business or leisure

・“Only 13 minutes from Shibuya” Convenient access to central Tokyo, where you can relax in a quiet living environment after enjoying sightseeing and shopping. ・Flexible accommodation styles allow you to flexibly adjust the length of stay and type of room, from sightseeing to work, short-term stays to long-term stays. ・Many residents live in share houses who are fluent in English, creating an international and diverse community. You can enjoy new friends and international exchange.

Superhost

A spacious guest room features a minimalist design with natural wood accents. Two yellow decorative pillows rest on a large bed, adorned with a textured quilt. A window offers views of the city skyline, allowing natural light to brighten the room.

Hotel room in Asakusa

4.86 out of 5 average rating, 83 reviews

12-min walk to Sensoji - Boutique Hotel

一遊ホテル浅草 is a boutique hotel located in Taito City, offering excellent access to major transportation. Nestled in a quiet residential neighborhood, yet close to Tokyo’s most popular sightseeing spots, this is an ideal base for tourists, couples, and business travelers – only a 12-minute walk from the famous Sensoji Temple, where you can enjoy the blend of traditional culture and modern Tokyo vibes. Plenty of dining options nearby, from traditional Japanese food to stylish cafes.

Top guest favorite

A vibrant mural depicting a pack of wolves in motion covers the walls and ceiling of the room. The colorful design features flowing patterns and dynamic shapes, creating an immersive environment. Two single beds are positioned against the vivid backdrop, enhancing the artistic atmosphere.

Hotel room in Kouenjikita

4.94 out of 5 average rating, 108 reviews

Stay in Art 1 min from Koenji Sta./BnA Koenji 2F

BnA Home Koenji is an independent art hotel created by the Bed & Art Project (BnA)—an ambitious and experimental hospitality concept that blends art, community, and immersive travel. At BnA, guests don't just stay at a hotel—they stay inside a work of art. Each room is a one-of-a-kind collaboration, designed and built by local artists, architects, textile designers, and carpenters to create a deeply personal and unforgettable experience.

Guest favorite

The image displays three smart pods featuring semi-double beds with dark, textured bedding. Each pod includes a mirror and a small hanging area for clothing. Soft lighting creates a calming ambiance, highlighting the modern and organized layout of the sleeping spaces.

Hotel room in Udagawacho

4.81 out of 5 average rating, 142 reviews

TheMillennialsShibuya/Mixed Smart Pod/1 Guest

Welcome to The Millennials Shibuya, a futuristic accommodation facility equipped with the world's first IOT-equipped "Smart Pod" and a lounge with a coworking space. In addition, there are plenty of common spaces, including a 24-hour shared lounge, a 24-hour self-kitchen, a 24-hour working lounge, a shared shower and toilet, and a shared laundry. 20% of the total area of the hotel is allocated to the common area.

Guest favorite

A room features natural wooden flooring and two large windows with shoji screens allowing soft light. A double bed with a blue and yellow striped coverlet is positioned beside a small table adorned with flowers. A kitchenette is visible in the background.

Hotel room in Kanamecho

4.86 out of 5 average rating, 313 reviews

★New★PDO INN Coffee & Open-air bath on the roof

★Our serene handcrafted house in the heart of Tokyo will inspire you. ★From Ikebukuro to here, about 18minutes on foot. ★Or it is a 1-minute walk by subway from next station, Kanamecho. ★20sq meter ★There is an open-air bath on the roof.(4th floor) ★Free high speed Wifi + Portable Wifi ★Coffee beans & Coffee Grinder ★Aēsop amenities (body soap, shampoo, conditioner)